Fighting temptation, have an apple
Shakes the snakes, pip the system
Let's get into it, tabernacle

from Lupe Fiasco (Ft. Gemini) – Just Might Be OK Lyrics on Rap Genius

Meaning

Religious theme here as Lupe warns us against temptation before offering us an apple, commonly seen as the fruit that led to the first sin. Lu continues the religious theme referencing when Paul shook the snake. In addition, Lu references a Tabernacle, which was the dwelling place for the divine.

When he says pip the system, he means that he will beat the system which ties into the idea that he wants to shake off the snakes, which could refer to snitches or cops.

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