- Salt and Shadow by Thrice prod. by Eric Palmquist
- Scavengers by Thrice prod. by Thrice
- Scavengers (Acoustic) by Thrice
- Sea Change by Thrice prod. by Eric Palmquist
- Second Sight by Thrice prod. by Thrice
- See You in the Shallows by Thrice prod. by Brian McTernan
- Send Me an Angel by Thrice
- Seneca by Thrice prod. by Eric Palmquist
- Silhouette by Thrice prod. by Brian McTernan
- Silhouette (Revisited) by Thrice prod. by Thrice
- Silver Wings by Thrice prod. by Thrice
- So Strange I Remember You by Thrice prod. by Brian McTernan
- Stand and Feel Your Worth by Thrice prod. by Steve Osborne
- Stare at the Sun by Thrice prod. by Brian McTernan
- Stare at the Sun (Revisited) by Thrice (Ft. Andy Hull) prod. by Thrice
- Stay with Me by Thrice prod. by Eric Palmquist
- Still Life by Thrice prod. by Thrice
- Stumbling West by Thrice prod. by Eric Palmquist & Thrice
- Summer Set Fire to the Rain by Thrice prod. by Thrice
- Summer Set Fire to the Rain (Acoustic) by Thrice prod. by Thrice