- Set Fire (Mang-Kon Remix) prod. by Dan Burns
- She Can Wait by Early Winters prod. by Early Winters
- Shoot prod. by Gavin Monaghan
- Shoot (Live)
- Simplicity Hurts prod. by Bruce Lampcov & Dan Burns
- Simplicity Hurts (Glitterous Remix) prod. by Dan Burns
- Simultaneous by Puscifer prod. by Mat Mitchell & Maynard James Keenan
- Simultaneous (Justin Chancellor Mix) by Puscifer (Ft. Justin Chancellor) prod. by Mat Mitchell & Maynard James Keenan
- Simultaneous (Live) by Puscifer
- Simultaneous (Twin Limb Mix) by Puscifer (Ft. Twin Limb) prod. by Mat Mitchell & Maynard James Keenan
- Sit Tight prod. by Gavin Monaghan
- Slow Motion Addict prod. by Kurt-Pagan Davies
- Slow Motion Addict (Baking Soda Blues Mix)
- Slow Motion Addict (Monkey Lever G-Spot Waltz Version)
- Slow Motion Addict (Very Cool Remix)
- Smoke and Mirrors (The Beta Machine Mix) by Puscifer (Ft. The Beta Machine) prod. by Mat Mitchell & Maynard James Keenan
- Someone Must Be Stretched Out by Early Winters prod. by Early Winters
- Sour Grapes (Legend of the Mix) by Puscifer prod. by Mat Mitchell & Maynard James Keenan
- Spanish Burn by Early Winters prod. by Dan Burns, Justin Rutledge & Zac Rae
- Speak by Gary Go